Publications
出版品
- 2021 How does rice cope with too little oxygen during its early life?
- Su-May Yu, Hsiang-Ting Lee, Shuen-Fang Lo, Tuan-Hua David Ho
- New Phytol . 2021 Jan;229(1):36-41.
- 2017 Large-scale phenomics analysis of a T-DNA tagged mutant population.
- Wu HP, Wei FJ, Wu CC, Lo SF, Chen LJ, Fan MJ, Chen S, Wen IC, Yu SM, Ho TH, Lai MH, Hsing YI.
- GigaScience, Volume 6, Issue 8, 1 August 2017, Pages 1–7.
- 2016 Genetic resources offer efficient tools for rice functional genomics research.
- Lo SF, Fan MJ, Hsing YI, Chen LJ, Chen S, Wen IC, Liu YL, Chen KT, Jiang MJ, Lin MK, Rao MY, Yu LC, Ho TH, Yu SM.
- Plant Cell Environ. 2016 May;39(5):998-1013. doi: 10.1111/pce.12632. Epub 2015 Nov 24. (Review)
- 2015 Source-Sink Communication: Regulated by Hormone, Nutrient, and Stress Cross-Signaling
- Su-May Yu, Shuen-Fang Lo, Tuan-Hua David Ho
- Trends Plant Sci . 2015 Dec;20(12):844-857.
- 2013 International consortium of rice mutagenesis: resources and beyond.
- Wei FJ, Droc G, Guiderdoni E, Hsing YI.
- Rice (N Y). 2013 Dec 17;6(1):39. doi: 10.1186/1939-8433-6-39.
- 2010 Methods for rice phenomics studies.
- Chern CG, Fan MJ, Huang SC, Yu SM, Wei FJ, Wu CC, Trisiriroj A, Lai MH, Chen S, Hsing YI.
- Methods Mol Biol. 2011;678:129-38. doi: 10.1007/978-1-60761-682-5_10.
- 2007 Global functional analyses of rice promoters by genomics approaches.
- Yu SM, Ko SS, Hong CY, Sun HJ, Hsing YI, Tong CG, Ho TH.
- Plant Mol Biol. 2007 Nov;65(4):417-25. Epub 2007 Oct 9.
- 2007 A rice phenomics study - phenotype scoring and seed propagation of a T-DNA insertion-induced rice mutant population.
- Chern CG, Fan MJ, Yu SM, Hour AL, Lu PC, Lin YC, Wei FJ, Huang SC, Chen S, Lai MH, Tseng CS, Yen HM, Jwo WS, Wu CC, Yang TL, Li LS, Kuo YC, Li SM, Li CP, Wey CK, Trisiriroj A, Lee HF, Hsing YI.
- Plant Mol Biol. 2007 Nov;65(4):427-38. Epub 2007 Aug 14.
- 2007 A rice gene activation/knockout mutant resource for high throughput functional genomics.
- Hsing YI, Chern CG, Fan MJ, Lu PC, Chen KT, Lo SF, Sun PK, Ho SL, Lee KW, Wang YC, Huang WL, Ko SS, Chen S, Chen JL, Chung CI, Lin YC, Hour AL, Wang YW, Chang YC, Tsai MW, Lin YS, Chen YC, Yen HM, Li CP, Wey CK, Tseng CS, Lai MH, Huang SC, Chen LJ, Yu SM.
- Plant Mol Biol. 2007 Feb;63(3):351-64. Epub 2006 Nov 21. (highly accessed)
- 2007 Activation tagging systems in rice.
- Johnson AAT, Yu SM, Tester M.
- Rice Functional Genomics: Challenges, Progress and Prospects. Narayana Upadhyaya (ed.) Springer. 2007; pp 333-353 (invited review article)
- 2026 Multifaceted roles of rice ABA/stress-induced intrinsically disordered proteins in augmenting drought resistance
- Meng-Chun Lin, I-Chieh Tseng, Ching-Lan Wang, Wen-Rong Hsiao, Yun-Jhih Shih, Wan-Chi Lin, Wen-Dar Lin, Su-May Yu, Tuan-Hua David Ho
- Plant Cell Physiol . 2026 Jun 2;67(5):707-723.
- 2025 Increased chloroplast occupancy in bundle sheath cells of rice hap3H mutants revealed by Chloro-Count: a new deep learning-based tool.
- Julia Lambret Frotte, Pedro P Buarque de Gusmão, Georgia Smith, Shuen-Fang Lo, Su-May Yu, Ross W Hendron, Steven Kelly, Jane A Langdale
- New Phytol . 2025 Feb;245(4):1512-1527.
- 2025 Mitochondrial AOX1a and an H2O2 feed-forward signalling loop regulate flooding tolerance in rice
- Cong Danh Nguyen, Chun-Hsien Lu, Yi-Shih Chen, Hsiang-Ting Lee, Shuen-Fang Lo, An-Chi Wei, Tuan-Hua David Ho, Su-May Yu
- Plant Biotechnol J . 2025 Feb;23(2):395-411.
- 2025 The endoglucanase gene LOC_Os09g23084 is involved in rice development and susceptibility to sheath rot disease
- Ping Wan, Chi-Kuan Tu, Kai-Jie Jang, Su-May Yu, Shuen-Fang Lo, Meng-Yi Lin, Zun-Jie Syu, Yu-Hsuan Chiu, Tuan-Hua David Ho, Miin-Huey Lee
- Rice (N Y) . 2025 Aug 19;18(1):78.
- 2025 Paraquat resistance mutations have differential effects on plant fitness in two rice cultivars
- Jared B Fudge , Teresa B Fitzpatrick
- Biochem J (2025) 482 (08): 401–412.
- 2024 A Large-Scale Hydroponic Evaluation of Rice Mutants for Pythium Resistance
- Zun-Jie Syu, Chi-Kuan Tu, Chi-Yu Chen, Shuen-Fang Lo, Miin-Huey Lee
- Plant Dis . 2024 Aug;108(8):2309-2320.
- 2024 A newly evolved rice-specific gene JAUP1 regulates jasmonate biosynthesis and signalling to promote root development and multi-stress tolerance.
- Muzaffar A, Chen YS, Lee HT, Wu CC, Le TT, Liang JZ, Lu CH, Balasubramaniam H, Lo SF, Yu LC, Chan CH, Chen KT, Lee MH, Hsing YI, Ho TD, Yu SM.
- Plant Biotechnol J. 2024 May;22(5):1417-1432. doi: 10.1111/pbi.14276. Epub 2024 Jan 9.
- 2023 Hydrogen peroxide regulates the Osa-miR156-OsSPL2/OsTIFY11b module in rice
- Bo-Shun Tseng, Cheng-Chung Huang, Yu-Chi King, Ming-Tsung Wu, Chih-Hung Hsieh, Kun-Ting Hsieh, Yue-Ie Hsing, Shih-Tong Jeng
- Plant Cell Environ . 2023 Aug;46(8):2507-2522.
- 2023 Simultaneous detection of miRNA and mRNA at the single‐cell level in plant tissues
- Chi-Chih Wu, Kun-Ting Hsieh, Su-Ying Yeh, Yen-Ting Lu, Liang-Jwu Chen, Maurice S B Ku, Wen-Hsiung Li
- Plant Biotechnol J . 2023 Jan;21(1):136-149.
- 2022 A single promoter-TALE system for tissue-specific and tuneable expression of multiple genes in rice
- Florence Danila, Tom Schreiber, Maria Ermakova, Lei Hua, Daniela Vlad, Shuen-Fang Lo, Yi-Shih Chen, Julia Lambret-Frotte, Anna S Hermanns, Benedikt Athmer, Susanne von Caemmerer, Su-May Yu, Julian M Hibberd, Alain Tissier, Robert T Furbank, Steven Kelly, Jane A Langdale
- Plant Biotechnol J . 2022 Sep;20(9):1786-1806.
- 2022 Closer vein spacing by ectopic expression of nucleotide-binding and leucine-rich repeat proteins in rice leaves
- Shuen-Fang Lo , Jolly Chatterjee , Akshaya K Biswal, I-Lun Liu, Yu-Pei Chang, Pei-Jing Chen, Samart Wanchana, Abigail Elmido-Mabilangan, Robert A Nepomuceno, Anindya Bandyopadhyay, Yue-Ie Hsing, William Paul Quick
- Plant Cell Rep . 2022 Feb;41(2):319-335.
- 2021 A drought-responsive rice amidohydrolase is the elusive plant guanine deaminase with the potential to modulate the epigenome
- Dhananjay Gotarkar, Toshisangba Longkumer, Naoki Yamamoto, Amrit Kaur Nanda, Tamara Iglesias, Lin-Feng Li, Berta Miro, Elisa Blanco Gonzalez, Maria Montes Bayon, Kenneth M Olsen, Yue-Ie Caroline Hsing, Ajay Kohli
- Physiol Plant . 2021 Aug;172(4):1853-1866.
- 2021 Comparisons within the Rice GA 2-Oxidase Gene Family Revealed Three Dominant Paralogs and a Functional Attenuated Gene that Led to the Identification of Four Amino Acid Variants Associated with GA Deactivation Capability.
- Kun-Ting Hsieh, Yi-Ting Chen, Ting-Jen Hu, Shih-Min Lin, Chih-Hung Hsieh, Su-Hui Liu, Shiau-Yu Shiue, Shuen-Fang Lo, I-Wen Wang, Ching-Shan Tseng, Liang-Jwu Chen
- Rice (N Y) . 2021 Jul 28;14(1):70.
- 2021 Rice transcription factor GAMYB modulates bHLH142 and is homeostatically regulated by TDR during anther tapetal and pollen development
- Swee-Suak Ko, Min-Jeng Li, Yi-Cheng Ho, Chun-Ping Yu, Ting-Ting Yang, Yi-Jyun Lin, Hung-Chien Hsing, Tien-Kuan Chen, Chung-Min Jhong, Wen-Hsiung Li, Maurice Sun-Ben Ku
- J Exp Bot . 2021 Jun 22;72(13):4888-4903.
- 2021 Using Machine Learning Approaches to Predict Target Gene Expression in Rice T-DNA Insertional Mutants
- Ching-Hsuan Chien, Lan-Ying Huang, Shuen-Fang Lo, Liang-Jwu Chen, Chi-Chou Liao, Jia-Jyun Chen, Yen-Wei Chu
- Front Genet . 2021 Dec 17:12:798107.
- 2020 Rice Big Grain 1 promotes cell division to enhance organ development, stress tolerance and grain yield
- Shuen-Fang Lo, Ming-Lung Cheng, Yue-Ie Caroline Hsing, Yi-Shih Chen, Kuo-Wei Lee, Ya-Fang Hong, Yu Hsiao, An-Shan Hsiao, Pei-Jing Chen, Lai-In Wong, Nan-Chen Chen, Christophe Reuzeau, Tuan-Hua David Ho, Su-May Yu
- Plant Biotechnol J . 2020 Sep;18(9):1969-1983.
- 2019 EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches
- Chi-Chou Liao, Liang-Jwu Chen, Shuen-Fang Lo, Chi-Wei Chen, Yen-Wei Chu
- PLoS Comput Biol . 2019 May 8;15(5):e1006942.
- 2019 Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus
- Ferran Sánchez-Sanuy, Cristina Peris-Peris, Shiho Tomiyama, Kazunori Okada, Yue-Ie Hsing, Blanca San Segundo, Sonia Campo
- BMC Plant Biol . 2019 Dec 18;19(1):563.
- 2019 OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice
- Raquel Salvador-Guirao, Patricia Baldrich, Shiho Tomiyama, Yue-Ie Hsing, Kazunori Okada, Blanca San Segundo
- Ann Bot . 2019 Jan 1;123(1):79-93.
- 2019 Studies of a rice sterile mutant sstl from the TRIM collection
- Chia-Ling Chang, Jerry C Serapion, Han-Hui Hung, Yan-Cheng Lin, Yuan-Ching Tsai, Wann-Neng Jane, Men-Chi Chang, Ming-Hsin Lai, Yue-Ie C Hsing
- Bot Stud . 2019 Jul 10;60(1):12.
- 2019 Sugar starvation-regulated MYBS2 and 14-3-3 protein interactions enhance plant growth, stress tolerance, and grain weight in rice
- Yi-Shih Chen, Tuan-Hua David Ho, Lihong Liu Ding Hua Lee, Chun-Hua Lee, Yi-Ru Chen, Shu-Yu Lin, Chung-An Lu, Su-May Yu
- Proc Natl Acad Sci U S A . 2019 Oct 22;116(43):21925-21935.
- 2018 The Polycistronic miR166k-166h Positively Regulates Rice Immunity via Post-transcriptional Control of EIN2
- Raquel Salvador-Guirao, Yue-Ie Hsing, Blanca San Segundo
- Front Plant Sci . 2018 Mar 20:9:337.
- 2017 Candidate regulators of early leaf development in maize perturb hormone signalling and secondary cell wall formation when constitutively expressed in rice.
- Peng Wang, Shanta Karki, Akshaya K Biswal, Hsiang-Chun Lin, Mary Jacqueline Dionora, Govinda Rizal, Xiaojia Yin, Mara L Schuler, Tom Hughes, Jim P Fouracre, Basel Abu Jamous, Olga Sedelnikova, Shuen-Fang Lo, Anindya Bandyopadhyay, Su-May Yu, Steven Kelly, W Paul Quick, Jane A Langdale
- Sci Rep . 2017 Jul 3;7(1):4535.
- 2017 Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice
- Plant Cell Physiol . 2017 Sep 1;58(9):1494-1506.
- Ming-Lung Cheng, Shuen-Fang Lo, An-Shan Hsiao, Ya-Fang Hong, Su-May Yu, Tuan-Hua David Ho
- 2017 Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and Pollen Development in Rice
- Swee-Suak Ko, Min-Jeng Li, Yi-Jyun Lin, Hong-Xian Hsing, Ting-Ting Yang, Tien-Kuan Chen, Chung-Min Jhong, Maurice Sun-Ben Ku
- Front Plant Sci. 2017 Jul 18;8:1258.
- 2017 Ectopic expression of specific GA2 oxidase mutants promotes yield and stress tolerance in rice.
- Lo SF, Ho TH, Liu YL, Jiang MJ, Hsieh KT, Chen KT, Yu LC, Lee MH, Chen CY, Huang TP, Kojima M, Sakakibara H, Chen LJ, Yu SM.
- Plant Biotechnol J. 2017 Jul;15(7):850-864. doi: 10.1111/pbi.12681. Epub 2017 Mar 23.
- 2016 Lack of Genotype and Phenotype Correlation in a Rice T-DNA Tagged Line Is Likely Caused by Introgression in the Seed Source
- Fu-Jin Wei, Yuan-Ching Tsai, Yu-Ming Hsu, Yu-An Chen, Ching-Ting Huang, Hshin-Ping Wu, Lin-Tzu Huang, Ming-Hsin Lai, Lin-Yun Kuang, Shuen-Fang Lo, Su-May Yu, Yann-Rong Lin, Yue-Ie Caroline Hsing
- PLoS One . 2016 May 17;11(5):e0155768.
- 2016 Somaclonal variation does not preclude the use of rice transformants for genetic screening.
- Wei FJ, Kuang LY, Oung HM, Cheng SY, Wu HP, Huang LT, Tseng YT, Chiou WY, Hsieh-Feng V, Chung CH, Yu SM, Lee LY, Gelvin SB, Hsing YI.
- Plant J. 2016 Mar;85(5):648-59. doi: 10.1111/tpj.13132.
- 2015 Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL.
- Shalabh Dixit, Akshaya Kumar Biswal, Aye Min, Amelia Henry, Rowena H Oane, Manish L Raorane, Toshisangba Longkumer, Isaiah M Pabuayon, Sumanth K Mutte, Adithi R Vardarajan, Berta Miro, Ganesan Govindan, Blesilda Albano-Enriquez, Mandy Pueffeld, Nese Sreenivasulu , Inez Slamet-Loedin, Kalaipandian Sundarvelpandian, Yuan-Ching Tsai, Saurabh Raghuvanshi, Yue-Ie C Hsing, Arvind Kumar, Ajay Kohli
- Sci Rep. 2015 Oct 28;5:15183.
- 2015 Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice
- Tsung-Meng Wu, Wan-Rong Lin, Ching Huei Kao, Chwan-Yang Hong
- Plant Mol Biol . 2015 Apr;87(6):555-64.
- 2015 Source-sink communication: regulated by hormone, nutrient, and stress cross-signaling.
- Yu SM, Lo SF, Ho TH.
- Trends Plant Sci. 2015 Dec;20(12):844-57. doi: 10.1016/j.tplants.2015.10.009. Epub 2015 Nov 18. (Review)
- 2015 Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL.
- Dixit S, Kumar Biswal A, Min A, Henry A, Oane RH, Raorane ML, Longkumer T, Pabuayon IM, Mutte SK, Vardarajan AR, Miro B, Govindan G, Albano-Enriquez B, Pueffeld M, Sreenivasulu N, Slamet-Loedin I, Sundarvelpandian K, Tsai YC, Raghuvanshi S, Hsing YI, Kumar A, Kohli A.
- Sci Rep. 2015 Oct 28;5:15183. doi: 10.1038/srep15183.
- 2015 MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors.
- Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B.
- RNA Biol. 2015;12(8):847-63. doi: 10.1080/15476286.2015.1050577.
- 2014 Metabolic adaptation to sugar/O2 deficiency for anaerobic germination and seedling growth in rice.
- Lee KW, Chen PW, Yu SM.
- A special issue on Flooding Stress in Plants. Plant Cell Environ. 2014 Oct;37(10):2234-44. doi: 10.1111/pce.12311. Epub 2014 Apr 9. (invited review article)
- 2014 Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.
- Hsu KH, Liu CC, Wu SJ, Kuo YY, Lu CA, Wu CR, Lian PJ, Hong CY, Ke YT, Huang JH, Yeh CH.
- Plant Mol Biol. 2014 Sep;86(1-2):125-37. doi: 10.1007/s11103-014-0217-6. Epub 2014 Jul 8.
- 2014 The bHLH142 transcription factor coordinates with TDR1 to modulate the expression of EAT1 and regulate pollen development in rice.
- Ko SS, Li MJ, Ku MSB, Ho YC, Lin YJ, Chuang MH, Hsing HX, Lien YC, Yang HT, Chang HC, Chan MT.
- Plant Cell. 2014 Jun;26(6):2486-2504. Epub 2014 Jun 3.
- 2014 Increasing leaf vein density by mutagenesis: laying the foundations for C4 rice.
- Feldman AB, Murchie EH, Leung H, Baraoidan M, Coe R, Yu SM, Lo SF, Quick WP.
- PLoS One. 2014 Apr 23;9(4):e94947. doi: 10.1371/journal.pone.0094947. eCollection 2014.
- 2014 SnRK1A-interacting negative regulators modulate the nutrient starvation signaling sensor SnRK1 in source-sink communication in cereal seedlings under abiotic stress.
- Lin CR, Lee KW, Chen CY, Hong YF, Chen JL, Lu CA, Chen KT, Ho TH, Yu SM.
- Plant Cell. 2014 Feb;26(2):808-27. doi: 10.1105/tpc.113.121939. Epub 2014 Feb 25.
- 2013 Abscisic acid- and stress-induced highly proline-rich glycoproteins regulate root growth in rice.
- Tseng IC, Hong CY, Yu SM, Ho TH.
- Plant Physiol. 2013 Sep;163(1):118-34. doi: 10.1104/pp.113.217547. Epub 2013 Jul 25.
- 2013 Ectopic expression of OsMADS45 activates the upstream genes Hd3a and RFT1 at an early development stage causing early flowering in rice.
- Wang JD, Lo SF, Li YS, Chen PJ, Lin SY, Ho TY, Lin JH, Chen LJ.
- Bot Studies. (2013) 54: 12. doi:10.1186/1999-3110-54-12.
- 2012 Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters.
- Thangasamy S, Chen PW, Lai MH, Chen JC, Jauh GY.
- Plant J. 2012 Jul;71(2):288-302. doi: 10.1111/j.1365-313X.2012.04989.x. Epub 2012 May 25.
- 2012 Serotonin accumulation in transgenic rice by over-expressing tryptophan decarboxylase results in a dark brown phenotype and stunted growth.
- Kanjanaphachoat P, Wei BY, Lo SF, Wang IW, Wang CS, Yu SM, Yen ML, Chiu SH, Lai CC, Chen LJ.
- Plant Mol Biol. 2012 Apr;78(6):525-43. doi: 10.1007/s11103-012-9882-5.
- 2011 Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence.
- Thangasamy S, Guo CL, Chuang MH, Lai MH, Chen JC, Jauh GY.
- New Phytol. 2011 Feb;189(3):869-82. doi: 10.1111/j.1469-8137.2010.03538.x. Epub 2010 Nov 16.
- 2010 A rice DEAD-box protein, OsRH36, can complement an Arabidopsis atrh36 mutant, but cannot functionally replace its yeast homolog Dbp8p.
- Huang CK, Yu SM, Lu CA.
- Plant Mol Biol. 2010 Sep;74(1-2):119-28. doi: 10.1007/s11103-010-9659-7. Epub 2010 Jul 6.
- 2010 A DEAD-box protein, AtRH36, is essential for female gametophyte development and is involved in rRNA biogenesis in Arabidopsis.
- Huang CK, Huang LF, Huang JJ, Wu SJ, Yeh CH, Lu CA.
- Plant Cell Physiol. 2010 May;51(5):694-706. doi: 10.1093/pcp/pcq045. Epub 2010 Apr 8.
- 2009 Mutant resources in rice for functional genomics of the grasses.
- Krishnan A, Guiderdoni E, An G, Hsing YI, Han CD, Lee MC, Yu SM, Upadhyaya N, Ramachandran S, Zhang Q, Sundaresan V, Hirochika H, Leung H, Pereira A.
- Plant Physiol. 2009 Jan;149(1):165-70. doi: 10.1104/pp.108.128918.
- 2008 A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice.
- Lo SF, Yang SY, Chen KT, Hsing YI, Zeevaart JA, Chen LJ, Yu SM.
- Plant Cell. 2008 Oct;20(10):2603-18. doi: 10.1105/tpc.108.060913. Epub 2008 Oct 24.
- 2007 The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice.
- Lu CA, Lin CC, Lee KW, Chen JL, Huang LF, Ho SL, Liu HJ, Hsing YI, Yu SM.
- Plant Cell. 2007 Aug;19(8):2484-99. Epub 2007 Aug 31.
- 2007 T-DNA insertion mutants as a resource for rice functional genomics.
- Guiderdoni E, An G, Yu SM, Hsing YI, Wu CY.
- Rice Functional Genomics: Challenges, Progress and Prospects. Narayana Upadhyaya (ed.) Springer. 2007; pp 181-221
- 2006 Designing and constructing novel gene promoters to generate stress-tolerant plants without yield penalty.
- Ho TH, Hong CY, Chan MT, Yu SM.
- Rice Genetics V: Proceedings of the Fifth International Rice Genetics Symposium, Darshan S Brar, David J Mackill & Bill Hardy (ed.). 2006; pp 331-340
- 2004 Rice mutant resources for gene discovery.
- Hirochika H, Guiderdoni E, An G, Hsing YI, Eun MY, Han CD, Upadhyaya N, Ramachandran S, Zhang Q, Pereira A, Sundaresan V, Leung H.
- Plant Mol Biol. 2004 Feb;54(3):325-34.